#!genome-build GRCm38.p2
#!genome-version GRCm38
#!genome-date 2012-01
#!genome-build-accession NCBI:GCA_000001635.4
#!genebuild-last-updated 2014-07
10	protein_coding	CDS	127004697	127004771	.	+	0	gene_id "ENSMUSG00000025432"; transcript_id "ENSMUST00000129173"; exon_number "2"; gene_name "Avil"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Avil-002"; transcript_source "havana"; tag "CCDS"; ccds_id "CCDS24221"; protein_id "ENSMUSP00000123405";
9	protein_coding	UTR	7358328	7360461	.	+	.	gene_id "ENSMUSG00000049723"; transcript_id "ENSMUST00000005950"; gene_name "Mmp12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Mmp12-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS22804";
7	protein_coding	stop_codon	28359805	28359807	.	-	0	gene_id "ENSMUSG00000037552"; transcript_id "ENSMUST00000094644"; exon_number "19"; gene_name "Plekhg2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Plekhg2-004"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS21040";
12	protein_coding	CDS	3900277	3900361	.	+	0	gene_id "ENSMUSG00000020661"; transcript_id "ENSMUST00000172689"; exon_number "11"; gene_name "Dnmt3a"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Dnmt3a-005"; transcript_source "havana"; tag "CCDS"; ccds_id "CCDS25784"; protein_id "ENSMUSP00000133543";
1	protein_coding	CDS	75438251	75438354	.	+	0	gene_id "ENSMUSG00000033021"; transcript_id "ENSMUST00000037796"; exon_number "4"; gene_name "Gmppa"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Gmppa-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS15072"; protein_id "ENSMUSP00000035564";
16	protein_coding	exon	32955300	32955405	.	+	.	gene_id "ENSMUSG00000022801"; transcript_id "ENSMUST00000135193"; exon_number "4"; gene_name "Lrch3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Lrch3-005"; transcript_source "havana"; exon_id "ENSMUSE00001294942";
5	processed_transcript	exon	31654468	31654861	.	+	.	gene_id "ENSMUSG00000029142"; transcript_id "ENSMUST00000145264"; exon_number "5"; gene_name "Mrpl33"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Mrpl33-003"; transcript_source "havana"; exon_id "ENSMUSE00000792936";
16	protein_coding	exon	16877832	16878016	.	+	.	gene_id "ENSMUSG00000022779"; transcript_id "ENSMUST00000119787"; exon_number "3"; gene_name "Top3b"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Top3b-004"; transcript_source "havana"; tag "CCDS"; ccds_id "CCDS27990"; exon_id "ENSMUSE00001257889";
11	protein_coding	CDS	16869219	16869360	.	+	0	gene_id "ENSMUSG00000020122"; transcript_id "ENSMUST00000020329"; exon_number "7"; gene_name "Egfr"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Egfr-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS24443"; protein_id "ENSMUSP00000020329";
6	protein_coding	exon	60944476	60945138	.	+	.	gene_id "ENSMUSG00000054641"; transcript_id "ENSMUST00000129603"; exon_number "1"; gene_name "Mmrn1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Mmrn1-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS51799"; exon_id "ENSMUSE00000790080";
X	retained_intron	exon	7705853	7706149	.	+	.	gene_id "ENSMUSG00000031148"; transcript_id "ENSMUST00000129845"; exon_number "1"; gene_name "Gpkow"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Gpkow-002"; transcript_source "havana"; exon_id "ENSMUSE00000792213";
2	protein_coding	exon	20709405	20709603	.	+	.	gene_id "ENSMUSG00000036617"; transcript_id "ENSMUST00000114610"; exon_number "6"; gene_name "Etl4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Etl4-007"; transcript_source "havana"; exon_id "ENSMUSE00001020605";
17	protein_coding	exon	13882383	13882501	.	+	.	gene_id "ENSMUSG00000068036"; transcript_id "ENSMUST00000137784"; exon_number "26"; gene_name "Mllt4"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Mllt4-005"; transcript_source "havana"; exon_id "ENSMUSE00000809795"; tag "mRNA_end_NF";
7	protein_coding	CDS	143703151	143703335	.	-	0	gene_id "ENSMUSG00000037606"; transcript_id "ENSMUST00000121409"; exon_number "10"; gene_name "Osbpl5"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Osbpl5-002"; transcript_source "havana"; tag "CCDS"; ccds_id "CCDS57598"; protein_id "ENSMUSP00000113375";
2	protein_coding	transcript	28447941	28455508	.	+	.	gene_id "ENSMUSG00000035829"; transcript_id "ENSMUST00000040324"; gene_name "Ppp1r26"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Ppp1r26-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS15836";
X	protein_coding	CDS	142228367	142228381	.	+	0	gene_id "ENSMUSG00000042271"; transcript_id "ENSMUST00000042329"; exon_number "2"; gene_name "Nxt2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Nxt2-002"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS41155"; protein_id "ENSMUSP00000048221";
2	nonsense_mediated_decay	exon	93739570	93739759	.	-	.	gene_id "ENSMUSG00000027198"; transcript_id "ENSMUST00000125407"; exon_number "10"; gene_name "Ext2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Ext2-002"; transcript_source "havana"; exon_id "ENSMUSE00001284121";
5	protein_coding	CDS	9421505	9421657	.	+	2	gene_id "ENSMUSG00000056004"; transcript_id "ENSMUST00000134991"; exon_number "7"; gene_name "9330182L06Rik"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "9330182L06Rik-006"; transcript_source "havana"; protein_id "ENSMUSP00000121757";
12	protein_coding	CDS	56612912	56613059	.	-	0	gene_id "ENSMUSG00000058669"; transcript_id "ENSMUST00000072631"; exon_number "1"; gene_name "Nkx2-9"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Nkx2-9-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS25923"; protein_id "ENSMUSP00000072425";
15	protein_coding	exon	99737547	99737653	.	-	.	gene_id "ENSMUSG00000023021"; transcript_id "ENSMUST00000109035"; exon_number "10"; gene_name "Cers5"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Cers5-002"; transcript_source "havana"; exon_id "ENSMUSE00001300962";
8	protein_coding	exon	95718193	95718335	.	+	.	gene_id "ENSMUSG00000031671"; transcript_id "ENSMUST00000034096"; exon_number "6"; gene_name "Setd6"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Setd6-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS22566"; exon_id "ENSMUSE00001262849";
4	protein_coding	CDS	103004141	103004341	.	+	0	gene_id "ENSMUSG00000028523"; transcript_id "ENSMUST00000116317"; exon_number "4"; gene_name "Tctex1d1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Tctex1d1-201"; transcript_source "ensembl"; tag "CCDS"; ccds_id "CCDS18405"; protein_id "ENSMUSP00000112019";
11	protein_coding	exon	76202552	76202635	.	+	.	gene_id "ENSMUSG00000069808"; transcript_id "ENSMUST00000094014"; exon_number "2"; gene_name "Fam57a"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Fam57a-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS36230"; exon_id "ENSMUSE00001210777";
17	processed_transcript	exon	6443548	6443630	.	-	.	gene_id "ENSMUSG00000096780"; transcript_id "ENSMUST00000190059"; exon_number "6"; gene_name "Tmem181b-ps"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "Tmem181b-ps-004"; transcript_source "havana"; exon_id "ENSMUSE00000989947";
19	nonsense_mediated_decay	exon	3886362	3886466	.	+	.	gene_id "ENSMUSG00000024843"; transcript_id "ENSMUST00000153343"; exon_number "5"; gene_name "Chka"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Chka-010"; transcript_source "havana"; exon_id "ENSMUSE00001309120";
11	protein_coding	exon	86278764	86278922	.	-	.	gene_id "ENSMUSG00000034297"; transcript_id "ENSMUST00000043624"; exon_number "25"; gene_name "Med13"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Med13-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS36267"; exon_id "ENSMUSE00000271055";
9	protein_coding	exon	36850347	36850446	.	+	.	gene_id "ENSMUSG00000032118"; transcript_id "ENSMUST00000034630"; exon_number "3"; gene_name "Fez1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Fez1-001"; transcript_source "havana"; tag "CCDS"; ccds_id "CCDS40581"; exon_id "ENSMUSE00001263898";
4	processed_transcript	exon	155249802	155249963	.	+	.	gene_id "ENSMUSG00000073684"; transcript_id "ENSMUST00000126803"; exon_number "1"; gene_name "2610002J02Rik"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "2610002J02Rik-003"; transcript_source "havana"; exon_id "ENSMUSE00000802590";
9	nonsense_mediated_decay	exon	21586901	21587038	.	+	.	gene_id "ENSMUSG00000032185"; transcript_id "ENSMUST00000130032"; exon_number "12"; gene_name "Carm1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Carm1-002"; transcript_source "havana"; exon_id "ENSMUSE00001301094";
4	protein_coding	UTR	60067510	60067529	.	-	.	gene_id "ENSMUSG00000073842"; transcript_id "ENSMUST00000079697"; gene_name "Mup7"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Mup7-001"; transcript_source "havana";
12	protein_coding	CDS	76141335	76141473	.	-	2	gene_id "ENSMUSG00000021055"; transcript_id "ENSMUST00000110421"; exon_number "5"; gene_name "Esr2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Esr2-001"; transcript_source "havana"; tag "CCDS"; ccds_id "CCDS25987"; protein_id "ENSMUSP00000106051";
16	nonsense_mediated_decay	exon	23109120	23109259	.	+	.	gene_id "ENSMUSG00000022884"; transcript_id "ENSMUST00000123413"; exon_number "4"; gene_name "Eif4a2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Eif4a2-003"; transcript_source "havana"; tag "CCDS"; ccds_id "CCDS49805"; exon_id "ENSMUSE00000560683";
4	nonsense_mediated_decay	transcript	53631716	53659678	.	+	.	gene_id "ENSMUSG00000054752"; transcript_id "ENSMUST00000129648"; gene_name "Fsd1l"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Fsd1l-003"; transcript_source "havana";
1	protein_coding	CDS	66644272	66644452	.	+	0	gene_id "ENSMUSG00000055567"; transcript_id "ENSMUST00000061620"; exon_number "43"; gene_name "Unc80"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Unc80-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS48283"; protein_id "ENSMUSP00000053692";
17	protein_coding	exon	25662514	25662826	.	+	.	gene_id "ENSMUSG00000002279"; transcript_id "ENSMUST00000116641"; exon_number "11"; gene_name "Lmf1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Lmf1-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS37502"; exon_id "ENSMUSE00000827228";
5	protein_coding	UTR	138994772	138995037	.	-	.	gene_id "ENSMUSG00000025856"; transcript_id "ENSMUST00000076095"; gene_name "Pdgfa"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Pdgfa-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS19802";
10	retained_intron	exon	69976048	69976255	.	+	.	gene_id "ENSMUSG00000069601"; transcript_id "ENSMUST00000182687"; exon_number "9"; gene_name "Ank3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Ank3-023"; transcript_source "havana"; exon_id "ENSMUSE00001217380";
1	nonsense_mediated_decay	transcript	156006234	156036480	.	-	.	gene_id "ENSMUSG00000026466"; transcript_id "ENSMUST00000136331"; gene_name "Tor1aip1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Tor1aip1-003"; transcript_source "havana";
4	protein_coding	UTR	155563700	155563979	.	+	.	gene_id "ENSMUSG00000029063"; transcript_id "ENSMUST00000105613"; gene_name "Nadk"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Nadk-002"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS19031";
MG153_PATCH	retained_intron	transcript	4112320	4113965	.	+	.	gene_id "ENSMUSG00000097096"; transcript_id "ENSMUST00000181468"; gene_name "PITPNM1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "PITPNM1-010"; transcript_source "havana";
7	processed_transcript	exon	143588492	143588583	.	-	.	gene_id "ENSMUSG00000010755"; transcript_id "ENSMUST00000154022"; exon_number "2"; gene_name "Cars"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Cars-005"; transcript_source "havana"; exon_id "ENSMUSE00001228278";
14	TR_V_gene	CDS	52792316	52792361	.	+	0	gene_id "ENSMUSG00000096478"; transcript_id "ENSMUST00000178426"; exon_number "1"; gene_name "Trav9d-1"; gene_source "ensembl_havana"; gene_biotype "TR_V_gene"; transcript_name "Trav9d-1-001"; transcript_source "ensembl_havana"; protein_id "ENSMUSP00000136741"; tag "cds_end_NF"; tag "mRNA_end_NF";
2	protein_coding	start_codon	58357678	58357680	.	-	0	gene_id "ENSMUSG00000026834"; transcript_id "ENSMUST00000112607"; exon_number "1"; gene_name "Acvr1c"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Acvr1c-004"; transcript_source "havana";
X	nonsense_mediated_decay	exon	151230233	151230452	.	+	.	gene_id "ENSMUSG00000041245"; transcript_id "ENSMUST00000149140"; exon_number "6"; gene_name "Wnk3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Wnk3-002"; transcript_source "havana"; exon_id "ENSMUSE00001314141";
7	protein_coding	exon	27355214	27355287	.	-	.	gene_id "ENSMUSG00000089832"; transcript_id "ENSMUST00000003857"; exon_number "4"; gene_name "Shkbp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Shkbp1-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS21018"; exon_id "ENSMUSE00001229669";
4	protein_coding	CDS	118482256	118482400	.	-	0	gene_id "ENSMUSG00000033191"; transcript_id "ENSMUST00000184261"; exon_number "9"; gene_name "Tie1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Tie1-002"; transcript_source "havana"; protein_id "ENSMUSP00000139279";
11	nonsense_mediated_decay	UTR	118023405	118023925	.	+	.	gene_id "ENSMUSG00000017715"; transcript_id "ENSMUST00000100185"; gene_name "Pgs1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Pgs1-003"; transcript_source "havana";
X	retained_intron	exon	159816577	159816706	.	+	.	gene_id "ENSMUSG00000040990"; transcript_id "ENSMUST00000150433"; exon_number "5"; gene_name "Sh3kbp1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Sh3kbp1-005"; transcript_source "havana"; exon_id "ENSMUSE00001304160";
18	protein_coding	exon	10725548	10726533	.	+	.	gene_id "ENSMUSG00000024294"; transcript_id "ENSMUST00000052838"; exon_number "1"; gene_name "Mib1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Mib1-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS29058"; exon_id "ENSMUSE00000512157";
4	protein_coding	CDS	33031586	33031616	.	+	0	gene_id "ENSMUSG00000028277"; transcript_id "ENSMUST00000124992"; exon_number "1"; gene_name "Ube2j1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "Ube2j1-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS18019"; protein_id "ENSMUSP00000118333";