Getting the data

To get the data download and unzip this tarball:

Change dir to the root and download the data from this folder:

cd ~
curl -O https://www.chg.ox.ac.uk/bioinformatics/training/MSc_GM_2022/CM4-5-NGS_pipelines/data/variant_calling_data.tgz

this might take a moment to download. Now extract the data:

tar -xzf variant_calling_data.tgz

You should now have a folder called variant_calling. Let's delete the tarball and change into it:

rm variant_calling_data.tgz
cd variant_calling