4057972 + 0 in total (QC-passed reads + QC-failed reads) 0 + 0 secondary 57972 + 0 supplementary 5645 + 0 duplicates 3804728 + 0 mapped (93.76% : N/A) 4000000 + 0 paired in sequencing 2000000 + 0 read1 2000000 + 0 read2 3537690 + 0 properly paired (88.44% : N/A) 3731530 + 0 with itself and mate mapped 15226 + 0 singletons (0.38% : N/A) 158610 + 0 with mate mapped to a different chr 91064 + 0 with mate mapped to a different chr (mapQ>=5)