4052328 + 0 in total (QC-passed reads + QC-failed reads) 0 + 0 secondary 52328 + 0 supplementary 11009 + 0 duplicates 3944197 + 0 mapped (97.33% : N/A) 4000000 + 0 paired in sequencing 2000000 + 0 read1 2000000 + 0 read2 3656804 + 0 properly paired (91.42% : N/A) 3867244 + 0 with itself and mate mapped 24625 + 0 singletons (0.62% : N/A) 176234 + 0 with mate mapped to a different chr 101094 + 0 with mate mapped to a different chr (mapQ>=5)