4035334 + 0 in total (QC-passed reads + QC-failed reads) 0 + 0 secondary 35334 + 0 supplementary 4254 + 0 duplicates 2118039 + 0 mapped (52.49% : N/A) 4000000 + 0 paired in sequencing 2000000 + 0 read1 2000000 + 0 read2 1944424 + 0 properly paired (48.61% : N/A) 2072704 + 0 with itself and mate mapped 10001 + 0 singletons (0.25% : N/A) 110806 + 0 with mate mapped to a different chr 61272 + 0 with mate mapped to a different chr (mapQ>=5)