Open-source software
BGEN
A C++ library implementing the BGEN genotype data format
QCTOOL
A tool for quality control and analysis of gwas datasets
HPTEST
Software to test for genetic association between hosts and pathogens
LDBIRD
Software to compute and histogram pairwise LD metrics
BINGWA
Model-based meta-analysis for genome-wide association studies
Specifications
The BGEN format (v1.3)
A compressed binary format for typed and imputed genotype data
Closed-source software
SNPTEST
Software to test for association between genotypes and phenotypes
© Gavin Band. Last modified: 1-12-7. Website built with Franklin.jl and the Julia programming language.