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Publications

Epigenomic analysis reveals a dynamic and context-specific macrophage enhancer landscape associated with innate immune activation and tolerance

Zhang P. et al, (2022), Genome Biology, 23

Natural Killer cells demonstrate distinct eQTL and transcriptome-wide disease associations, highlighting their role in autoimmunity

Gilchrist JJ. et al, (2022), Nature Communications, 13

High-throughput mass spectrometry maps the sepsis plasma proteome and differences in response

Mi Y. et al, (2022)

A blood atlas of COVID-19 defines hallmarks of disease severity and specificity

Ahern DJ. et al, (2022), Cell, 185, 916 - 938.e58

Genome-wide CRISPR/Cas9-knockout in human induced Pluripotent Stem Cell (iPSC)-derived macrophages

Navarro-Guerrero E. et al, (2021), Scientific Reports, 11

A blood atlas of COVID-19 defines hallmarks of disease severity and specificity

Ahern DJ. et al, (2021)

Natural Killer cells demonstrate distinct eQTL and transcriptome-wide disease associations, highlighting their role in autoimmunity

Gilchrist JJ. et al, (2021)

Using de novo assembly to identify structural variation of complex immune system gene regions

Zhang J-Y. et al, (2021)

Framework for quality assessment of whole genome cancer sequences

Whalley JP. et al, (2020), Nature Communications, 11

Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples

Bailey MH. et al, (2020), Nature Communications, 11

Sex differences in oncogenic mutational processes

Li CH. et al, (2020), Nature Communications, 11

Pan-cancer analysis of whole genomes

(2020), Nature, 578, 82 - 93

Recurrent somatic mutations reveal new insights into consequences of mutagenic processes in cancer.

Stobbe MD. et al, (2019), PLoS computational biology, 15

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